PepA and PepB. Your mentor's initial studies identified a pentapeptide substrate called Tide5 that appeared to be able to distinguish the kinetic behaviors of PepA and PepB. All they had time to tell you was this: At low Tide5 concentration, the V (initial velocity) of PepA was greater than PepB, but at high Tide5 concentration, the reverse was true.
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- The equil ibrium constant for the attachment of a substrate to the active site of an enzyme was measured as 200.In a separate experiment, the rate constant for the secondorder attachment was found to be 1.5 x 108 dm3 mol-1 s- 1.What is the rate constant for the loss of the unreacted substrate from the active site?The initial velocities of two different enzyme-catalyzed reactions were measured over a series of substrate concentrations. The following results were obtained: Enyme A: KM = 1.5 mM, Vmax = 10 μM s-1 Enyme B: KM = 5.0 mM, Vmax = 85 µM s-1 (a) Which enzyme binds to its substrate more tightly (assume k.1 >> k₂ in the Michaelis-Menten model)? (b) Calculate the initial velocities of each reaction when the substrate concentration is 2.5 mM. (c) Calculate the Kcat of each enzyme if the total enzyme concentration is 100 nM. (d) Which enzyme is the more efficient catalyst? Explain your answer. The enzyme carbonic anhydrase is strongly inhibited by the drug acetazolamide. A plot of the initial reaction velocity (as a percentage of Vmax) in the absence and presence of the inhibitor is shown below. What type of inhibition is taking place? Explain your reasoning. V (% of Vmax) 100 50 0.2 0.4 No inhibitor Acetazolamide [S] (MM) 0.6 0.8 1Explain as brief and simple as possible. Answers must not be more than 30 WORDS each. a. All coenzymes are cofactors, but not all cofactors are coenzymes. Explain this statement. b. How does the induced-fit model of enzyme action explain the broad specificities of some enzymes? c. In competitive inhibition, can both the inhibitor and the substrate bind to an enzyme at the same time? Explain your answer d. Why is penicillin toxic to bacteria but not to higher organisms? e. What is the metabolic basis for the observation that many adults cannot ingest large quantities of milk without developing gastric difficulties?
- The steps of the chymotrypsin mechanisms are listed below (1-7). Put the steps of chymotrypsin mechanism in the correct order. Figure representing chymotrypsin mechanism is given for reference. a.The portion (N-terminal end) of original substrate with the new C terminus diffuses away b. Substrate binding c. His 57 catalyzes removal of H from Ser 195 hydroxyl; Ser 195’s nucleophilic O attacks carbonyl C of substrate; tetrahedral intermediate is formed d. Water binding; water is deprotonated by His 57; resulting OH nucleophilically attacks carbonyl of remaining substrate; tetrahedral intermediate is formed e. His 57 donates H to N of…The figure below shows the dependence of the enzyme's rate, v (in µM/min), as a function of substrate concentration, S (in mM). Also shown is the dependence of the rate in the presence of an inhibitor, present at a concentration of 0.2 mM. Based on this information, which of the following does this inhibitor most likely interact with? 1/v 1- 05 1/[S) O A. Michaelis complex O B. [E O C. free enzyme O D. free substrate O E. Both "A" and "B."Another member of your research group studied the kinetics of theGAPDH from the organism. They also determined if the GAPDH fromthe organism is also inhibited by the known inhibitor of GAPDH fromhumans. A. From the following data, determine the KM (Michaelis-Menten Constant) and the Vmax(maximum velocity) of the enzyme without and with the inhibitor. B. If GAPDH is inhibited, what specific type of inhibition is observed?
- mTOR is a cytoplasmic kinase that regulates cell division. Its misregulation can lead to cancer. The canonical mTOR inhibitor, rapamycin, is FDA approved as a cancer treatment. Rapamycin is an allosteric inhibitor that does not bind anywhere near the substrate binding site of the enzyme. A) What is the name of this type of inhibition? B) Sketch a REPRESENTATIVE double-reciprocal/Lineweaver-Burke plot that includes the enzyme kinetics for BOTH the uninhibited and inhibited reaction. Be sure to: 1) Make ABSOLUTELY clear which curve is your uninhibited reaction and which is your inhibited reaction. 2) Label the X and Y axes. 3) Indicate what the X- and Y-intercepts represent with regards to Michaelis-Menten kinetics. C) Can increasing the substrate concentration overcome this type of inhibition? Explain in a sentence or two.For the following two scenarios, sketch the complete reaction free energy diagram for an enzyme-catalyzed conversion of a single substrate (S) into product (P), where the reaction is spontaneous in the forward direction. For each of these, overlay the free energy diagram for the uncatalyzed reaction and indicate AAG" on your sketch: a). Substrate binding is rate limiting b). The chemical step is rate limitingIn some organisms, isoleucine can be synthesized in a multi-step procedure (a series of enzymatic reactions), beginning with a molecule of threonine. Keeping that in mind explain the experimental results below. Amount of endproduct Activity of threonine (isoleucine) deaminase None Low Medium High Very high High Moderate Very low
- From a series of flasks with a constant concentration of enzyme the following initial velocities weretaken, they were obtained as a function of the concentration of the substrate.a) Calculate the KM and Vmax kinetic parameters of the three forms (Lineweaver-Burk, Eadie-Hofstee, Dixon).b) Analyze which are the atypical data that cause a low correlation, which can be eliminated and explain youranswer.The Lineweaver-Burke plot was originally developed in order to "linearize" the data obtained from enzyme kinetics experiments, in order to facilitate the determination of kinetic parameters. Why is it not considered to be an accurate method for this purpose? It is very difficult to draw a straight line on a computer. It is very difficult to calculate the variables required for the "x" and "y" axis. It is more accurate to use the standard "V versus [S]" plot to determine Vmax and KM- The plot weights the least accurate data points the most heavily. It is no longer considered to be acceptable to extrapolate from known data.The above graphs (Lineweaver-Burk) were plotted using data from an experiment that investigated changes in initial velocity, V0, (in mmol/min) as a function of substrate concentration, [S], (in mmol/L) for an enzyme-catalysed reaction. The initial velocity was measured at a fixed concentration of enzyme at different concentrations of substrate in the absence of any inhibitor and was then repeated in the presence of a competitive inhibitor at two different concentrations. Use the graph to determine the maximal velocity of the reaction the Km value of the uninhibited reaction the Km value of the reaction with (i) the lower level of inhibitor and (ii) the higher level of the inhibitor. TEMPLATE FOR ANSWERS Vmax of uninhibited reaction Intercept on y-axis = = __________________ Vmax = __________________ Km value of the uninhibited reaction Intercept on x-axis = =…