For the following two scenarios, sketch the complete reaction free energy diagram for anenzyme-catalyzed conversion of a single substrate (S) into product (P), where thereaction is spontaneous in the forward direction. For each of these, overlay the freeenergy diagram for the uncatalyzed reaction and indicate AAG" on your sketch:a). Substrate binding is rate limitingb). The chemical step is rate limiting

The enzymes are involved in increasing the reaction rate of a biochemical reaction. A reaction is…

Answered: For the following two scenarios, sketch…

Biochemistry

9th Edition

ISBN:9781319114671

Author:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.

Publisher:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.

Chapter1: Biochemistry: An Evolving Science

Section: Chapter Questions

Problem 1P

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In the scheme for enzymatic catalysed reaction proposed by Michaelis and Menten, the steps involve reversible formation of enzyme-substrate (ES) complex followed by conversion of the complex to the product (P). a) Derive the rate equation for enzymatic process. State an assumption made in this derivation. Terbitkan persamaan kadar tindak balas bagi proses enzim. b) By showing appropriate reaction mechanisms and rate equations, explain how enzyme catalytic reactions may be affected by competitive inhibition
In the scheme for enzymatic catalysed reaction proposed by Michaelis and Menten, the steps involve reversible formation of enzyme-substrate (ES) complex followed by conversion of the complex to the product (P) a) Derive the rate equation for enzymatic process. State an assumption made in this derivation. b) By showing appropriate reaction mechanisms and rate equations, explain how enzyme catalytic reactions may be affected by competitive inhibition
After purifying alkaline phosphatase, you perform enzyme kinetic experiments with and without an inhibitor to obtain the following plot: With inhibitor Without inhibitor 1/V (1/mM min?) 0.3 0.2 -150 -100 -50 50 100 150 200 250 300 1/s (1/mM) a) What is the name given to this type of enzymatic plot? b) Using the graph, calculate K_ and V_ inhibitor. Show all calculations. for the enzyme, with and without the max
a) Based on the data shown in the image, what are the Km and Vmax for the enzyme with L-DOPA and D-DOPA? Show any relevant analyses or calculatins you did to determine these values. ( HINT a graph might be helpful here! ) b) Based on your answer to part a, briefly describe how the kinetics of the enzyme differs for the two substrates. Which Substrate has better binding affinity to the enzyme
Which of the following is true under the following conditions: an enzyme displaying Michaelis-Menten kinetics where the enzyme concentration is 10 nM, the substrate concentration is 45 mM, and the Km is 50 µM? a) The enzyme has low catalytic efficiency for the substrate. b)The rate of catalysis is near half-maximal velocity. c)The enzymatic reaction is near maximal velocity. d)Halving the substrate concentration has little effect on the catalytic rate. e) There is not enough information provided.
k_1 E + SES E + P +0 k₂ S ↓↑ KIS ESS Based on this model, please answer the following questions: i) This is the model for what? Uncompet tive ii) Show the rate equation for an enzyme reaction of this type. iii) Show the Lineweaver-Burk plot for this case. A
when saturated with substrate, an enzyme has a maximum initial rate of 110mumoles of substrate converted to product per second. At a substrate concentration of 100mu M, the same enzyme converts substrate to product at a rate of 0.010mmoles/ sec. Assuming that Michaelis - Menten kinetics are followed, calculate the reaction rate when substrate concentration is 2x10^-3M.
1) Is the ratio of the forward rate constant and reverse rate constant changed by the presence of an enzyme catalyst? 2) 4) What is the simplest mathematical relationship between substrate concentrations [S], initial velocity (Vo) of an enzyme catalyzed reaction, the maximal velocity of the reaction (Vmax), and the ½ maximal Vo (i.e. Km) ? (Hint: what is the Michaelis-Menten Equation? 3) Graphically illustrate the most useful derivation of the Michaelis-Menton equation (that darn linearized, double-reciprocal)
Assume that the reaction catalyzed by an enzyme follows Michaelis-Menten kinetics. The substrate concentration needed to reach 50% of the maximum reaction velocity (Vmax) is 40 μM. What substrate concentration is required to obtain at least 20% of the maximum reaction velocity?
You will perform the protocol below for the calf intestinal alkaline phosphatase (CIP) provided. For each reaction, your final enzyme concentration should be 10 nM CIP. Note: Enzymes purchased are typically labelled with their “units of activity” (U), as this relates to how much enzyme is needed to catalyze a reaction. The 100 nM CIP provided has approximately 3 U/mL and was diluted 1 in 1,000 from a 500 U/mL purchased enzyme. 1) Create a table (similar to the one below) to help you determine and keep track of what to add to each of the cuvettes in which your reactions will be measured. The five different concentrations of PNPP should be: 25, 50, 100, 200, 300 μM. Each reaction will be in a final volume of 1 mL and contain 10 nM alkaline phosphatase. Concentrations of stock solutions: 1.0 mM PNPP, 100 nM calf intestinal phosphatase
Sketch the complete reaction free energy diagram for an enzyme-catalyzed conversion of a single substrate (S) into product (P), where the reaction is spontaneous in the forward direction Overlay the free energy diagram for the uncatalyzed reaction and indicate  delta delta G〒 on your sketch: Chemical step is rate limiting
The catalytic efficiency of many enzymes depends on pH. Chymotrypsin, which has a well-known catalytic mechanism, shows a maximum value of kcat/Km at pH 8.0. A) Draw a pH curve of chymotrypsin activity over the pH range of 5 to 10 and briefly explain the rationale within the context of catalysis for your depiction. In particular, note how kcat and Km may change over this pH range. B) Enzymes of the a-amylase family catalyze a reaction by forming a covalent intermediate analogous to chymotrypsin, but to a conserved aspartate residue. Illustrate a catalytic mechanism containing a tetrahedral intermediate for a glycogen debranching enzyme based upon its potential membership in the a-amylase family. (don’t need to draw a whole glycogen)

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