8. For the following molecule, draw the monomers *Hint* there are three different monomers a. What byproducts (if any) would form during this polymerization? b. Type of polymerization that occurred: O H₂N O ZI CH3 ZI COOH
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- 7. Hydrogen bonds are a crucial component of biomolecular structure and biomolecular interactions. In the following drawings, draw in several hydrogen bonds that are possible between atoms within the same molecule or between different molecules: A: Protein structure H₂C₁ #1 N-H N-C 0=C HR 1 N-H ORU 0=C N-HH-CR B: DNA base-pairing H H-N N-H N=C C-C H 0=C NIH C C=N HR 0=3₁ HR H-9-4 0-0 NIH N-H 0=C 0=0 RECH N-H N-H 0=8-₁ OH HR C: Plant cell wall (cellulose) CH₂OH H BỆNH O=C HA CH OH H CH₂OH ( он H HC-0 CH₂₂OH H OH 1 TH OH H IN HC- OH H CH₂OH CH₂₂OH O OH H C-CH H bH CH₂₂OH VA HS COK H ОН Biomolecules like DNA, proteins, and carbohydrates depend on hydrogen bonds to maintain their overall structure. However, each individual hydrogen bond is relatively weak. Using protein structure from the question above as an example, explain how to resolve the apparent contradiction between these two statements.Match the following nucleobases (designated AD) with their names and answer questions about them. NH, NH, C D NH2 Note that some of the items from the answer list should NOT be used. Guanine 1. Aand B - Cytosine 2 Cand D • Adenine 3. Not shuwn v Thymine 4. D v Uracil 5. B a Aand C v Which of tho shown bases are pyrimidines? 7. A and O v Which of the shown bases form canonical A-T Watson-Crick base pair? S. A v Which of the shown bases form canonical G-C Watson.Crick base-pair? 9. Band C 10. C 11. Band D4. What is the net charge (approximately) on the polypeptide shown below at pH 12.5? Lys - Arg - Val-Cys - Glu
- 5. Draw a diagram to show how the HH O H H O monomers to the right could be joined to form a polymer and identify the name of the linkage. H-N-C-C- OH + H-N-C-C-o-H CH33. Below is the structure of a nucleotide triphosphate. ATP R-O- R-O R-O- OIP O P -O O OP ADP OIPIO b. a. Label each phosphate group as a, ß, or y in boxes provided below each phosphate group. Put an "X" under all products you would expect from nucleophilic attack at the y phosphate group by a generic alcohol (R-OH). fofo O H R-O O. H Adenosine R-O OH fof O O=P O O H R-O-Adenosine H OH OIPIO NH₂ O-AMP AMP N O=0 O-Adenosine1. Choose the proper structure of the predominant form of L-M-L-P-D-T at pH 5. Provide a short explanation. 2. Choose the proper structure of the predominant form of L-A-L-Y at pH 11. Provide a short explanation.
- 29) Polyethylene can be obtained in two different forms. High-density polyethylene (0.94 g/cm3 is a linear polymer. Low-density polyethylene (0.92 g/cm3) is a branched polymer with short side-chains on 3% of the atoms along the polymer chain. What could be the reason of the change in the polymer density difference? 30) Which of the below given characterization technique can be used to identify the surface chemistry of a biomaterial? а) ТЕМ b) XPS c) TGA d) DTA 31) Sort the wettability for the given surfaces based on the given contact angle values ( non- wetting, good wetting, incomplete wetting ? a =90 a 180Which of the following best describes how the secondary structure of a protein is formed? A B с D O=U a-helix H O=C N-H R-C-H C=0 H-N H-C-R O=C N-H R-C-H C=O H-N O-C N-H R-C-H C=O H-N N-H 0= H-C-R H-N C=O R-C-4 N-H O=C H-C-R 4-1 Ç=O R-C-H N-H 0=C H-C-R (=O R-C-H B-pleated sheet ionic bonds between the R groups of the polypeptide amino acids -Uh hydrogen bonds between the carboxyl and amino groups of non-adjacent amino acids covalent bonds between the carboxyl and amino groups of adjacent amino acids hydrogen bonds between the R groups of the polypeptide amino acids9. Metabolically active tissues require lots of ATP, and making lots of ATP requires lots of oxygen. Luckily, metabolically active tissues have some tricks for encouraging hemoglobin to give up oxygen. Name and explain the "trick" depicted by images below. In your answer, be certain to explain the effect on hemoglobin structure. 1.0 a2 Lys 40 pH 7.6 Y 0.5- `pH 7.4 C terminus pH 7.2 Added + proton B, His 146 B, Asp 94 6. 10 po2 (kPa) Figure 7-19 Biochemistry, Sinth Edition 2ea/ H freenard Camny Figures16 Lhninge Principies of iecheminy Seventh dton 2017W.H Feenan and Company
- Many antibiotics alter the rate of reaction for enzymes that produce and then cross-link the strands of this polymer together. The image below shows the structure of one antibiotic called penicillin as compared to the portion of the peptidoglycan that undergoes cross linkage. Condon A HS. CH CH CH N-CH cooo Cand cooo wDAla-D-Ala [S] 2. Using the graph above, which condition do you predict was the penicillin condition? 3. Explain how penicillin effects the enzyme. 4. Why it is important to take the full dosage of antibiotics. Briefly explain 5. Is peptidoglycan still being produced in the portion of the graph marked by the circle in condition B?8. NMR measurements have shown that poly-lysine is a random coil at pH 7 but becomes a helix when the pH is raised above 10. If the same type of folding behavior is observed, what should be the pH dependence of poly-glutamate? A) Helix at pH 7 but random coil at pH 10 B) Random coil at pH 3 but helix at pH 7 C) Random coil at pH 7 but helix at pH 10 D) Helix at pH 3 but random coil at pH 7nt #2 nt #3 nt #4 3. In the following sequence, which of these nucleotides a. would have a free triphosphate group extending from one of the carbons of their sugars? b. would have a free hydroxyl (OH) group extending from the carbon of their sugars? nt #1 5'-GCAT-3' 3'-CGTA-5' nt #8 nt #5 nt #7 nt #6