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LIFE 121
Standard 5 Phylogeny: Assignment 3 P
ROBLEM
SET
S
TANDARD
5: P
HYLOGENY
; U
SE
MODELS
TO
ILLUSTRATE
AND
EXPLAIN
SPECIATION
AND
RELATEDNESS
.
Learning Objectives:
Interpret relatedness among species from a phylogeny.
Make a phylogenetic hypothesis from observations.
Use phylogenetic trees to demonstrate that homologous characters reflect shared ancestry but that convergent traits do not.
Build a phylogenetic tree using a pairwise similarity (or difference) matrix.
Draw phylogenetic trees that represent alternative hypotheses for patterns of speciation.
Reading: Chapter 20
The Snapping Shrimp
Two hypotheses can explain the pattern of species distribution in snapping shrimp seen in the figure below.
Hypothesis 1:
Speciation was caused by the formation of the Isthmus of Panama.
Hypothesis 2:
Speciation was caused by prezygotic behavioral barriers to gene flow.
1. Which hypothesis 1 or 2, proposes sympatric speciation?
2. Circle T or F for each of the statements related to the snapping shrimp species tree below. T F The two species within the Atlantic Ocean are more closely related to each other than they are to the species in the Pacific Ocean.
T F The species tree suggests that geographic isolation contributed to speciation in allopatry.
T F A. panamensis is more closely related to A. formosus
than
A. nuttingi T F The species tree indicates that A. panamensis, A. nuttingi and A. millsae
all radiated from an A. formosus
-like ancestor
Edited: 2.24.2024 GVB
Page 1
of 3
LIFE 121
Standard 5 Phylogeny: Assignment 3 4. Draw an alternative species tree for these 4 species
that would support the hypothesis
that the species in the Pacific Ocean are the result of the colonization of the Pacific Ocean by A. nuttingi
after the Isthmus of Panama formed followed by adaptive species radiation into new habitats. 3. Use the morphological traits to build a phylogenetic tree of plants. Label the traits on your tree. PLANTS
ginkg
o
biloba
creeping
liverwort
gree
n
alga
e
lady
tulip
tufted
lacefer
n
bisho
p pine
TRAITS
stomat
a
X
X
X
X
needle
s
X
cuticle
X
X
X
X
X
seeds
X
X
X
flower
s
X
cones
X
X
Edited: 2.24.2024 GVB
Page 2
of 3
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Related Questions
It is the proportion of replicate phylogenies that recovered a particular clade from the original phylogeny built using the original alignment. This also serves as a confidence level
that at out of 100, how many times the same branch is observed when repeating the generation of a phylogenetic tree on a resampled set of data.
OOO
Branch length
Operational Taxonomic Units (OTUS)
Branch node
Bootstrap value
arrow_forward
Draw a phylogenythat accurately portrays the evolutionary relationships among the organisms listed. Each organism listed should be at the tip of a branch on the tree. Use the internet to discover what type of organisms they are, and refer to the textbook and course notes as you determine the relationships among these organisms.
Label the phylogeny with each of the 6 species listed and write on the tree where the following derived traits evolved: specialized tissues, radial symmetry, bilateral symmetry, deuterostomy, protostomy, and ecdysozoan cuticle (the need for an animal to molt in order to grow).
Anthopleura xanthogrammica Giant Green Anemone
Chondrocladia lyra. harp sponge
Diadema antillarum black sea urchin
Euphasia superba. Antarctic krill
Phrynosoma cornutum. horny toad
Taenia saginata. beef tapeworm
arrow_forward
Phylogeny refers to the evolutionary descent of taxa. It refers to the relationship between ancestors and descendants and relationships among descendant taxa. It shows the lineage of taxa which can be summarized in a branching diagram called a phylogenetic tree.1. Express some basic evolutionary relationships among groups of microorganisms, plants, and animals;
2. Illustrate the relationship of organisms with their environment; and
3. Analyze environmental factors contributing to biodiversity richness and loss
arrow_forward
Identify the outgroup from the phylogenetic trees and box/mark the whole lineage in red.
Identify the most recent common ancestor for species A and B and mark it in blue. Identify the
most recent common ancestor for species C and D and mark it in green.
ABCDE
DE
면 V
BIU GGG
!!!
르르르
M
compre
arrow_forward
For novice biologists, taxonomy and phylogenetics are difficult concepts to understand and keep separate. This confusion is made worse because modern taxonomic methods make use of molecular tools. Write an essay that contrasts taxonomy to phylogenetics and explain how both disciplines are important to our understanding of species and evolution. Your essay should include a description of taxonomy and phylogenetics, as well as a detailed explanation about how information is represented in a phylogenetic tree or a cladogram.
arrow_forward
Study the diagrams below. The diagrams represent four possible phylogenetic trees showing the
relationship between the four species: M, L, S, and R.
B
A
M
LS R
M
LR
+d
\t
R
SML
RM S
tota
-444
What is the plausible explanation for the appearance of autapomorphic character c in species L and S of
tree A although they do not share a most recent common ancestor?
arrow_forward
A ASSIGNMENT1 2021.pdf
C:/Users/mulweli/Desktop/ASSIGNMENT1%202021.pdf
+.
E D Page view
A Read aloud
| V Draw
Highlight
VUESTIONZ
DISTEVATICS
Explain the aim of a branch of biology called systematics. (2)
ANSWER:
2.1
2.2
FILL-IN-THE-BLANKS
2.2.1
is the process of categorizing phylogenetic information into a retrieval
system consisting of many hierarchical levels or ranks. (2)
ANSWER:
2.2.2 Identifying organisms and assigning names to them comprise the activity called
(2)
ANSWER:
2.2.3 The goal of
is to identify evolutionary
patterns that unite organisms. (2)
ANSWER:
ANSWER:
2.2.4 These three fields of inquiry (above questions) are means by which
evaluates patterns
of diversity. (2)
ANSWER:
QUESTION 3
TAXONOMY
THE
INGLE MOST APPROPRIATE LETTER. USE ONLY LETTERS.
arrow_forward
Which of the phylogenetic trees below represent the same evolutionary relationships?
Tree 1
Tree 2
Tree 3
D
В
D
G
·E
O Tree 1 and Tree 3
O Tree 1 and Tree 2
O Tree 2 and Tree 3
All three represent the same relationships
O No two trees represent the same relationships
arrow_forward
Part I: Construct a phylogeny
Below is a list of seven hypothetical, currently-living species (A-G), and eleven of their character
states (i.e., traits). You will use these traits to construct your tree.
Species
Character states
green
еyes
green
no
no
egg
wings claws
hair
A
scales
tail
carnivore
teeth
spots
horns
layer
green
eyes
green
no
egg
В
scales
wings
horns
tail
carnivore
hair
teeth
spots
claws
layer
egg
layer
green
green
no
no
scales
wings claws
tail
carnivore
hair
spots
eyes
horns
teeth
no
no
no
egg
no
no
scales
red eyes
wings
claws
layer
no tail
carnivore
spots
horns
hair
teeth
no
no
egg
layer
no
no
E
spots
red eyes
horns
scales
claws
tail
carnivore
wings
hair
teeth
no
no
no
live
no
F
spots
red eyes
wings claws
carnivore
tail
hair
scales
horns
birth
teeth
no
no
no
live
no
G
spots
red eyes
wings claws
tail
herbivore
hair
scales
horns
birth
teeth
Assume that the extinct ancestor of this group, at the root of the phylogenetic tree, had the following
features: no spots, no scales,…
arrow_forward
Practice bio question:
Define the term unikont and explain the current taxonomic interpretation of where unikonts arose on the phylogenetic tree of life.
arrow_forward
When reading a phylogenetic tree, which of the following is true regarding the evolutionary
relationships among the taxa represented on the tree?
Taxa located at adjacent tips of the branches are always more closely related to each other than to other taxa
on the tree. Therefore, a species is always equally related to the taxon on the branch immediately to the right
it and the taxon on the branch immediately to the left of it
The branch lengths always represent the amount of morphological change between taxa
The internal nodes (branching points) of the tree represent the most recent common ancestors of the taxa
connected by the branches
The position of taxa on the tree is completely arbitrary and does not reflect their evolutionary relationships
arrow_forward
Use the information and model to answer the following question.
Phylogenetic trees are a type of model that can be used to show how organisms are
related through common ancestry. The phylogenetic tree model represents nodes
numbered 1 through 8.
A
CDE F GH
в
I
2
|5
Using evidence from the phylogenetic tree determine which species would
be MOST closely related to the species on branch C?
O A. The species on Branches F, G, H, and I are all equally related to the species
on branch C because they all split from a common ancestor at the same
time which is illustrated by having nodes 2 and 7 at the same height.
O B. The species on Branch A & B are both most closely related to the species on
branch C because they share the most most recent common ancestor at
node 2.
C. The species on Branch B is most closely related to the species on branch c
because they share the greatest number of common +ancestors.
D. The species on Branch A is most closely related to the species on branch C
because they…
arrow_forward
Define the following terms:
phylogeny
phenetics
cladistics
phylogenetic tree
clade
cladogram
phenogram
phylogenetic divergence
arrow_forward
The most parsimonious phylogenetic tree requires the fewest
evolutionary events as measured by the origin of shared derived
morphological characters. When the phylogeny is based on DNA the most
parsimonious tree requires fewer base changes.
True
False
arrow_forward
Define the term unikont and explain the current taxonomic interpretation of where unikonts arose on the phylogenetic tree of life
arrow_forward
Identify the outgroup from the phylogenetic trees and box/mark the whole lineage in red.
Identify the most recent common ancestor for species A and B and mark it in blue. Identify the
most recent common ancestor for species C and D and mark it in green.
E
A B C D E
B C D E
arrow_forward
When several possible phylogenetic trees can be produced from a data set, the most parsimonious tree:
O is the one that shows the smallest number of synapomorphies.
O is the one that shows the largest number of nodes.
O is the one that shows the largest number of analogous characteristics.
O is the one that shows the smallest number of evolutionary changes.
O is the one that shows the smallest number of branches.
arrow_forward
Concept Map: Complete the attached Systematics Concept Map. Type your answer on each level in the space provided. Be sure to include your name; save the file to your computer,
Requirements Levels and Key Terms: Levels and Key Terms LevelTerms Level I:Systematics Level II:Phylogeny Biological diversity Level IIITaxonomy Cladistic analysis Level IV:Identification of species Shared primitive characters Classification of species Dichotomously branching phylogenetic tree Shared derived characters Level V:Binomial Genus, family, order, class, phylum, kingdom Homologous similarities Relative time of origin Fossil records Outgroup comparison Clade Degree of divergence Level VI:Molecular comparisons (DNA, protein) Genus and species Morphology Fossils, DNA, and protein comparisons
arrow_forward
Phylogenetic trees are diagrams used to reflect evolutionary relationships among organisms or groups of organisms. _______ trees have a single ancestral line to which all organisms in the diagram relate to. ______ do not have a common ancestor but do show relationships among species.
arrow_forward
Help me please
arrow_forward
Construct a cladogram (This is all about Biology: Systematics Based on Evolutionary Relationships: Cladistics and Phylogeny).
Steps:
1. Choose a group of organisms (e.g. invertebrates);2. Download pictures of different species.3. In tabular form, list all the characters. Evaluate the characters (whether primitive or derived).4. Remember that in building your cladogram, use only shared derived characters.5. Construct your own cladogram.
arrow_forward
Cladistics produces a system of naming and classifying organisms. *
True
False
Each line of descent from a common ancestor has different derived characters. *
True
False
In biological nomenclature, the term species would refer to the binomial name. *
True
False
arrow_forward
Molecular clock techniques are used to
O calibrate radiometric clocks
measure the genetic distance between two taxa
O estimate when two taxa diverged from a common ancestor
determine the age of fossils
estimate the age of individual plants and animals in a population
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Phylogeny refers to the evolutionary descent of taxa. It refers to the relationship between ancestors and descendants and relationships among descendant taxa. It shows the lineage of taxa which can be summarized in a branching diagram called a phylogenetic tree.a. express some basic evolutionary relationships among groups of microorganisms, plants, and animals;
b. illustrate the relationship of organisms with their environment; and
c. analyze environmental factors contributing to biodiversity richness and loss
arrow_forward
Construct a character matrix with at least five characters for organisms beetle, pigeon, perch, salamander, and a mouse. (Pay attention to eyes, legs, number legs, antennae, body type/form; not limited to here). Then construct a phylogenetic tree using the character matrix and map the synapomorphies.
arrow_forward
C. Phylogenetic tree Interpretation.
Salamander Lizard
- Perch
Hagfish
Mouse
Chimp
Pigeon,
Feathers
Fur;
mammary
glands
Claws
or nails
Lungs
Jaws
1. Which organisms in the cladogram in figure 1 have fur and mammary glands?
2. Which organisms in the cladogram in figure 1 have jaws?
3. Based on the cladogram, which shared a common ancestor most recently----a mouse and a lizard or a mouse
and a perch?
4. Which two organisms would you expect to have a closer matching DNA sequence
for a gene that doesn't matter in terms of natural selection?--Hagfish and Pigeon or Hagfish and Salamander?
arrow_forward
STANDARDIZED
PHYLOGENETICS
BIODIVERSITY
EVOLUTION
EVIDENCES
BIOLÓGISTS KINGDOM
TAXONOMY
TAXONOMIC CLASSIFICATION
PHYLOGENETIC TREE
is in charge of
A branch of biology called (2).
system. A (4) who are experts in taxonomy, helps scientists
The variety of life in the world is known as (1)
classifying species and giving names via (3).
understand and organize the diversity of life in our planet. Basically, it means groups are classified within larger
groups.
The hierarchical (5)
of hierarchy is called the taxonomic level wherein the (6)
different because it tells the history of the (7)
(8)
on. Scientist must collect accurate information using (9)
using a (10) which looks like a sequentially branching tree, starting with one common branch, and then
splitting into more branches
helps scientists understand and organize the diversity of life in our planet .Each level
is the highest and specie the lowest. Phylogeny is
of a species or group of organisms. A field of science called
works on the…
arrow_forward
Describe the parts of a phylogeny, and interpret it (e.g., identify a
given taxon's sister taxon, and correctly identify the order of
diversification events)
arrow_forward
5 6
7
8
9
A
B
10
C
11
12 13 14
15
16
4. The organism circled at the base of a phylogenetic tree is
17
*
18
the simplest organisms among those depicted in the tree.
the common ancestor of all the organisms depicted in the tree.
the oldest living organism among those depicted in the tree.
the modern form of the common ancestor of all the organisms depicted in the tree.
19
20
*
21
*
arrow_forward
Please compare these phylogenetic trees and choose the most accurate statement about whether they are the same tree or not.
A
a
Select an answer and submit. For keyboard navigation, use the up/down arrow keys to select an answer.
b
с
DCBE
d
E A
They are not the same because the overall shape looks different.
They are not the same because they show different relationships among species.
Nodes have been rotated but the species relationships are the same.
They are the same because they have the same species at their tips.
D C B
arrow_forward
CLASSIFICATION AND EVOLUTION
Caminalcules are imaginary animals invented by the evolutionary biologist Joseph Camin. In this lab
exercise, you will construct an evolutionary tree of the Caminalcules using both the "living" species
and the additional 57 "fossil" species. This illustrates how modern classification schemes attempt to
reflect evolutionary history. In the process of doing this exercise you will be introduced to concepts
such as convergent evolution and vestigial structures.
The Phylogeny of Caminalcules
Using a large sheet of paper or long size bond paper, construct a phylogenetic tree for the
Caminalcules. Use a meter stick or ruler to draw 20 equally spaced horizontal lines on the paper.
Each of the horizontal line will be used to indicate an interval of one million years. Label each line so
that the one at the bottom of the paper represents an age of 19 million years and the top line represents
the present (0 years).
1. Cut out all the Caminalcules (including the living…
arrow_forward
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Related Questions
- It is the proportion of replicate phylogenies that recovered a particular clade from the original phylogeny built using the original alignment. This also serves as a confidence level that at out of 100, how many times the same branch is observed when repeating the generation of a phylogenetic tree on a resampled set of data. OOO Branch length Operational Taxonomic Units (OTUS) Branch node Bootstrap valuearrow_forwardDraw a phylogenythat accurately portrays the evolutionary relationships among the organisms listed. Each organism listed should be at the tip of a branch on the tree. Use the internet to discover what type of organisms they are, and refer to the textbook and course notes as you determine the relationships among these organisms. Label the phylogeny with each of the 6 species listed and write on the tree where the following derived traits evolved: specialized tissues, radial symmetry, bilateral symmetry, deuterostomy, protostomy, and ecdysozoan cuticle (the need for an animal to molt in order to grow). Anthopleura xanthogrammica Giant Green Anemone Chondrocladia lyra. harp sponge Diadema antillarum black sea urchin Euphasia superba. Antarctic krill Phrynosoma cornutum. horny toad Taenia saginata. beef tapewormarrow_forwardPhylogeny refers to the evolutionary descent of taxa. It refers to the relationship between ancestors and descendants and relationships among descendant taxa. It shows the lineage of taxa which can be summarized in a branching diagram called a phylogenetic tree.1. Express some basic evolutionary relationships among groups of microorganisms, plants, and animals; 2. Illustrate the relationship of organisms with their environment; and 3. Analyze environmental factors contributing to biodiversity richness and lossarrow_forward
- Identify the outgroup from the phylogenetic trees and box/mark the whole lineage in red. Identify the most recent common ancestor for species A and B and mark it in blue. Identify the most recent common ancestor for species C and D and mark it in green. ABCDE DE 면 V BIU GGG !!! 르르르 M comprearrow_forwardFor novice biologists, taxonomy and phylogenetics are difficult concepts to understand and keep separate. This confusion is made worse because modern taxonomic methods make use of molecular tools. Write an essay that contrasts taxonomy to phylogenetics and explain how both disciplines are important to our understanding of species and evolution. Your essay should include a description of taxonomy and phylogenetics, as well as a detailed explanation about how information is represented in a phylogenetic tree or a cladogram.arrow_forwardStudy the diagrams below. The diagrams represent four possible phylogenetic trees showing the relationship between the four species: M, L, S, and R. B A M LS R M LR +d \t R SML RM S tota -444 What is the plausible explanation for the appearance of autapomorphic character c in species L and S of tree A although they do not share a most recent common ancestor?arrow_forward
- A ASSIGNMENT1 2021.pdf C:/Users/mulweli/Desktop/ASSIGNMENT1%202021.pdf +. E D Page view A Read aloud | V Draw Highlight VUESTIONZ DISTEVATICS Explain the aim of a branch of biology called systematics. (2) ANSWER: 2.1 2.2 FILL-IN-THE-BLANKS 2.2.1 is the process of categorizing phylogenetic information into a retrieval system consisting of many hierarchical levels or ranks. (2) ANSWER: 2.2.2 Identifying organisms and assigning names to them comprise the activity called (2) ANSWER: 2.2.3 The goal of is to identify evolutionary patterns that unite organisms. (2) ANSWER: ANSWER: 2.2.4 These three fields of inquiry (above questions) are means by which evaluates patterns of diversity. (2) ANSWER: QUESTION 3 TAXONOMY THE INGLE MOST APPROPRIATE LETTER. USE ONLY LETTERS.arrow_forwardWhich of the phylogenetic trees below represent the same evolutionary relationships? Tree 1 Tree 2 Tree 3 D В D G ·E O Tree 1 and Tree 3 O Tree 1 and Tree 2 O Tree 2 and Tree 3 All three represent the same relationships O No two trees represent the same relationshipsarrow_forwardPart I: Construct a phylogeny Below is a list of seven hypothetical, currently-living species (A-G), and eleven of their character states (i.e., traits). You will use these traits to construct your tree. Species Character states green еyes green no no egg wings claws hair A scales tail carnivore teeth spots horns layer green eyes green no egg В scales wings horns tail carnivore hair teeth spots claws layer egg layer green green no no scales wings claws tail carnivore hair spots eyes horns teeth no no no egg no no scales red eyes wings claws layer no tail carnivore spots horns hair teeth no no egg layer no no E spots red eyes horns scales claws tail carnivore wings hair teeth no no no live no F spots red eyes wings claws carnivore tail hair scales horns birth teeth no no no live no G spots red eyes wings claws tail herbivore hair scales horns birth teeth Assume that the extinct ancestor of this group, at the root of the phylogenetic tree, had the following features: no spots, no scales,…arrow_forward
- Practice bio question: Define the term unikont and explain the current taxonomic interpretation of where unikonts arose on the phylogenetic tree of life.arrow_forwardWhen reading a phylogenetic tree, which of the following is true regarding the evolutionary relationships among the taxa represented on the tree? Taxa located at adjacent tips of the branches are always more closely related to each other than to other taxa on the tree. Therefore, a species is always equally related to the taxon on the branch immediately to the right it and the taxon on the branch immediately to the left of it The branch lengths always represent the amount of morphological change between taxa The internal nodes (branching points) of the tree represent the most recent common ancestors of the taxa connected by the branches The position of taxa on the tree is completely arbitrary and does not reflect their evolutionary relationshipsarrow_forwardUse the information and model to answer the following question. Phylogenetic trees are a type of model that can be used to show how organisms are related through common ancestry. The phylogenetic tree model represents nodes numbered 1 through 8. A CDE F GH в I 2 |5 Using evidence from the phylogenetic tree determine which species would be MOST closely related to the species on branch C? O A. The species on Branches F, G, H, and I are all equally related to the species on branch C because they all split from a common ancestor at the same time which is illustrated by having nodes 2 and 7 at the same height. O B. The species on Branch A & B are both most closely related to the species on branch C because they share the most most recent common ancestor at node 2. C. The species on Branch B is most closely related to the species on branch c because they share the greatest number of common +ancestors. D. The species on Branch A is most closely related to the species on branch C because they…arrow_forward
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