Consider the problem of searching for genes in DNA sequences using Horspool's algorithm. A DNA sequence is represented by a text on the alphabet {A, C, G, T}, and the gene segment is the pattern. Let the pattern be TAACTCCT 1.1) Construct the shift table t for the gene segment of chromosome length 8 (pattern) is given above. Character e A C G T Shift t(c)

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Consider the problem of searching for genes in DNA sequences using Horspool's algorithm. A DNA
sequence is represented by a text on the alphabet {A, C, G, T}, and the gene segment is the pattern. Let the
pattern be
TAACTC C T
1.1)
Construct the shift table t for the gene segment of chromosome length 8 (pattern) is given above.
Character c
A
C
T
Shift
t(c)
Apply Horspool's algorithm to locate the pattern given above in the following DNA sequence
1.2)
(text):
TTATAGCTTCTTATA GGCTCGCTAACTCCT
|Number of
comparisons
|(Karşılaştırma
sayısı)
TTATA GCTTCTTATA GGCTC GCTAA CTC CT
Total number of comparisons:
Transcribed Image Text:Consider the problem of searching for genes in DNA sequences using Horspool's algorithm. A DNA sequence is represented by a text on the alphabet {A, C, G, T}, and the gene segment is the pattern. Let the pattern be TAACTC C T 1.1) Construct the shift table t for the gene segment of chromosome length 8 (pattern) is given above. Character c A C T Shift t(c) Apply Horspool's algorithm to locate the pattern given above in the following DNA sequence 1.2) (text): TTATAGCTTCTTATA GGCTCGCTAACTCCT |Number of comparisons |(Karşılaştırma sayısı) TTATA GCTTCTTATA GGCTC GCTAA CTC CT Total number of comparisons:
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