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Dynamic Research Design

Decent Essays

In designing an experiment, one must be able to control as many variables as possible so the results can be interpreted as significant in knowing that no outside errors could occur. This basic component of experimental design allows for one to manipulate variables to achieve the desired outcome. A good scientist keeps this inquisitiveness in order to advance themselves in the project they are working on and the next experiment. The dynamic that exists between a researcher and their project is lead by intuition and persistence. This constant effort is made to get an experiment to, hopefully, demonstrate some phenomena. I have exercised all of the above qualities in many different research experiences. Most notably, the research experience I …show more content…

at the University of Pittsburgh department of Neurological surgery, I held a position on a research team that dealt with the neuropathological mechanisms of Huntington's disease (HD). The focus of my assigned project was to demonstrate a defect in mitochondrial protein import in those cells that expressed the mutant huntingtin protein. The majority of mitochondrial proteins are encoded in the nucleus, translated on cytoplasmic ribosomes, and exported to the mitochondria in premature form carrying a mitochondrial targeting sequence on N-terminal side of protein. These proteins are transported through the mitochondrial subunits TOM (translocase of outer membrane) and TIM (translocase of inner membrane). The data demonstrate that mutant huntingtin fragments directly interact with the TIM subunits and inhibits protein transport into the mitochondria. Based off of these findings it was hypothesized that due to this interaction between mutant HTT and TIM, the level of mitochondrially-targeted proteins will be reduced in mitochondria. My specific role in this project was to execute a comparative proteomic strategy consisting of protein separation, identification, and validation. Separation was performed by 2 Dimensional Gel Electrophoresis (DIGE) and identification by liquid chromatography followed by mass spectrometry …show more content…

Such a deficit of protein can disturb numerous mitochondrial pathways, such as membrane potential and respiratory function. Some of the most essential functions include the tricarboxylic acid cycle, oxidative phosphorylation, defense against reactive oxygen species, and mitochondrial DNA repair. The most significant decrease in abundance are Succinate Dehydrogenase Complex, Subunit A (SDHA) and Tu Translation Elongation Factor (TUFM). Interestingly, SDHA couples the tricarboxylic acid cycle and oxidative phosphorylation pathways. TUFM participates in protein translation. These deficits could interfere with mitochondrial ATP production and may increased oxidative damage of mitochondrial proteins and DNA due to a lack of machinery to correct it. The deficit of the mitochondrial proteome strongly suggests a role in the neurodegeneration in

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