phage practice problems

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Indiana University, Purdue University, Indianapolis *

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320

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Biology

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May 11, 2024

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Phage Practice Problems for M315 Phage titer determination (Ex. 23): 1. For each of the dilutions, 1 ml phage solution was mixed with E. coli cells and plated with soft agar: Dilutions 10 2 10 3 10 4 10 5 10 6 Plaques on plate Complete lysis Complete lysis Complete lysis >500 45 2. Original phage stock titer: _____________ (what is the unit used?) Burst size determination (Ex. 24): 1. What does the term “one-step” really mean? A) one generation of phage infection cycle; B) one growth phase in the phage cycle; C) one dilution step needed 2. Why are the following steps critical in the burst size determination? A) MOI <<1 B) The initial 5 min incubation with high cell-phage density C) The first 100-fold dilution to the DIL tube D) The use of chloroform 3. The One-Step growth curve of the T4 phage In the ADS tube, 0.1 ml above phage stock was mixed with 2 ml E. coli cells (3.0 x 10 8 cfu/ml) to a final volume of 2.1 ml. At 5 min, 0.1 ml cell-phage mixture was transferred from ADS to the DIL tube. At various time points, TSB-1 and TSB-2 tubes were prepared. 0.1 ml sample was taken from the TSB-2 tube and assayed for plaques. A) What is the number of E. coli cells in the ADS tube? B) What is the number of phage number in the ADS tube? C) What is the M.O.I value of this infection? Why is it important to keep MOI<<1? D) What is phage titer (pfu/ml) in the ADS tube at Time 0? What is the concentration of the infected E. coli cells ? E) Assuming the total dilution factor from ADS to the final plaque assay plate is 10 7 , what is the theoretical pfu/ml value for each of the following time points?
Time (min) Avg # Plaques on plate Theoretical phage titers as it would be in the ADS tube (pfu/ml) 15 1.1 25 1.5 30 9 35 81 40 155 45 243 50 239 What is the peak titer?_______________________ What is the phage burst size?__________________
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